STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106611374SRA stem-loop-interacting RNA-binding protein, mitochondrial-like. (101 aa)    
Predicted Functional Partners:
lrpprc
Leucine-rich PPR motif-containing protein, mitochondrial.
   
 
 0.956
ndufc1
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial.
   
    0.805
ruxg
Small nuclear ribonucleoprotein G.
   
 0.734
ENSSSAP00000083996
Small nuclear ribonucleoprotein polypeptide G.
   
 0.734
ncbp2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 0.716
ENSSSAP00000074862
annotation not available
   
    0.706
ndub4
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4-like.
   
    0.706
GRSF1
G-rich sequence factor 1.
   
 0.694
LOC106609400
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial-like.
   
    0.687
LOC106612226
Cytochrome b-c1 complex subunit 8-like.
   
 
 0.661
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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