STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lerl1Salmo salar Leptin receptor overlapping transcript-like 1 (lerl1), mRNA. (132 aa)    
Predicted Functional Partners:
LOC106579764
Transmembrane protein 50A-like isoform X1.
   
 
 0.908
TMEM50B
Transmembrane protein 50B.
   
 
 0.908
TM50B
Transmembrane protein 50B.
   
 
 0.908
rab13
Ras-related protein Rab-13.
    
 
 0.465
ENSSSAP00000022397
annotation not available
    
 
 0.465
smim12
Small integral membrane protein 12.
      
 0.435
ENSSSAP00000034195
annotation not available
      
 0.428
wdr74
WD repeat-containing protein 74.
      
 0.428
ENSSSAP00000080986
WD repeat domain 74.
      
 0.428
bend7
BEN domain-containing protein 7 isoform X3.
      
 0.424
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.