STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apoc1Apolipoprotein C-I isoform X1. (87 aa)    
Predicted Functional Partners:
LOC106605689
Apolipoprotein Eb-like.
   
  
 0.864
LOC106577506
Apolipoprotein Eb-like.
   
  
 0.861
LOC106570128
Apolipoprotein Eb-like.
   
  
 0.850
ENSSSAP00000020393
annotation not available
   
  
 0.777
ENSSSAP00000062870
annotation not available
   
  
 0.777
LOC100136579
Apolipoprotein B-100 isoform X1.
   
 
 0.764
LOC106611125
Apolipoprotein B-100-like.
   
 
 0.617
LOC106600070
Vitellogenin-like.
   
 
 0.617
LOC106568756
Uncharacterized protein LOC106568756 isoform X2.
   
 
 0.617
LOC100136426
Vitellogenin.
   
 
 0.617
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.