STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106609896pre-mRNA-processing factor 19. (505 aa)    
Predicted Functional Partners:
aqr
Intron-binding protein aquarius.
    
 0.986
PPIE
Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.
    
 0.984
bcas2
pre-mRNA-splicing factor SPF27.
   
 0.982
bcas2-2
pre-mRNA-splicing factor SPF27.
   
 0.982
LOC106566276
LOW QUALITY PROTEIN: pre-mRNA-splicing factor ISY1 homolog.
    
 0.981
cdc5l
Cell division cycle 5-like protein.
   
 0.980
LOC106609911
Pleiotropic regulator 1-like.
   
0.980
CDC5L
Cell division cycle 5-like protein.
   
 0.980
LOC106607544
pre-mRNA-splicing factor SYF1-like.
   
 0.980
LOC106602564
Fibrinogen gamma chain-like.
   
0.980
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.