STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106607499Rap guanine nucleotide exchange factor-like 1 isoform X2. (621 aa)    
Predicted Functional Partners:
serac1
Protein SERAC1 isoform X1.
      
 0.598
ogfod3
PKHD domain-containing transmembrane protein FLJ22222.
      
 0.598
ENSSSAP00000012892
Signal-induced proliferation-associated 1 like protein 1.
   
 0.549
LOC106603123
Signal-induced proliferation-associated protein 1-like isoform X1.
   
 0.549
ENSSSAP00000039102
Rap guanine nucleotide exchange factor (GEF) 5a.
    
 
0.537
LOC106570584
Rap guanine nucleotide exchange factor 5-like isoform X1.
    
 
 0.537
LOC106570585
Rap guanine nucleotide exchange factor 5-like.
    
 
0.537
LOC106589484
Protein lin-52 homolog.
      
 0.520
LOC106611063
Protein lin-52 homolog.
      
 0.520
laptm4a
Lysosomal-associated transmembrane protein 4A.
      
 0.513
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.