STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
loxhd1Lipoxygenase homology domain-containing protein 1. (2205 aa)    
Predicted Functional Partners:
skor2
SKI family transcriptional corepressor 2 isoform X1.
      
 0.730
slc39a6
Zinc transporter ZIP6.
      
 0.723
rnf165
RING finger protein 165 isoform X1.
    
 
 0.719
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
    
 0.611
smpx
Small muscular protein.
      
 0.587
bend7
BEN domain-containing protein 7 isoform X3.
    
 
 0.586
LOC106608191
Sodium/bile acid cotransporter-like.
      
 0.550
SLC10A1
Sodium/bile acid cotransporter-like.
      
 0.550
LOC106571093
Sodium/bile acid cotransporter-like.
      
 0.550
myo3a
myosin-IIIa isoform X3; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 
 0.530
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.