STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106611392Serine palmitoyltransferase 2-like. (478 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase 1 isoform X1.
  
0.969
sptssa
Serine palmitoyltransferase small subunit A; Stimulates the activity of serine palmitoyltransferase (SPT). The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference (By similarity). Belongs to the SPTSS family. SPTSSA subfamily.
    
 0.841
dhso
Sorbitol dehydrogenase.
  
 
 0.750
LOC106562152
Sorbitol dehydrogenase-like isoform X1.
  
 
 0.750
adhfe1
Hydroxyacid-oxoacid transhydrogenase, mitochondrial isoform X1.
    
 0.654
LOC106599247
3-ketodihydrosphingosine reductase-like; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.642
LOC106569188
3-ketodihydrosphingosine reductase-like.
     
 0.642
Sptssb
Serine palmitoyltransferase small subunit B.
    
 0.634
LOC106580970
Serine palmitoyltransferase small subunit B-like.
    
 0.634
LOC106563307
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
    
 0.601
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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