STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rd23aUV excision repair protein RAD23 homolog A. (387 aa)    
Predicted Functional Partners:
xpc
DNA repair protein complementing XP-C cells.
   
 0.981
ngly1
peptide-N(4)-(N-acetyl-beta- glucosaminyl)asparagine amidase isoform X1.
    
 0.980
LOC106562992
polyubiquitin-B.
    
 0.967
PSMD2
26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.
   
 0.961
mysm1
Histone H2A deubiquitinase MYSM1.
   
 0.912
LOC106613979
Histone H2A deubiquitinase MYSM1-like.
   
 0.912
LOC106572481-2
Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.
   
 0.900
LOC106572481
Ubiquitin-conjugating enzyme E2 variant 1 isoform X1.
   
 0.900
ENSSSAP00000041153
annotation not available
   
 0.900
ENSSSAP00000110757
26S proteasome non-ATPase regulatory subunit 2-like.
   
 0.897
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.