Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC106599523Paired box protein Pax-3-like isoform X1. (495 aa)    
Predicted Functional Partners:
ctnnb1
Catenin beta-1.
    
 0.805
LOC106603512
Mitochondrial import inner membrane translocase subunit Tim22-like isoform X1.
    
 0.743
LOC106567977
Mitochondrial import inner membrane translocase subunit Tim22-like.
    
 0.743
lef1
Lymphoid enhancer-binding factor 1 isoform X5.
    
 0.725
LOC106601158
Transcription factor Sox-10-like.
   
 0.711
LOC106601158-2
Transcription factor Sox-10-like.
   
 0.711
LOC106607141
Transcription factor Sox-10-like.
   
 0.711
foxd3
Forkhead box protein D3.
     
 0.641
LOC106584029
Forkhead box protein D3-B-like.
     
 0.641
LOC106571447
Nuclear receptor coactivator 1-like.
     
  0.623
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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