STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSSAP00000006529BRF1 RNA polymerase III transcription initiation factor subunit a. (639 aa)    
Predicted Functional Partners:
gtf3c3
General transcription factor 3C polypeptide 3.
    
 0.991
LOC106561920
mucin-5AC-like isoform X1.
    
 0.981
LOC106568365
mucin-5AC-like isoform X1.
    
 0.981
polr3f
DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.
    
 0.980
ENSSSAP00000106688
Polymerase (RNA) III (DNA directed) polypeptide F.
    
 0.980
crcp
DNA-directed RNA polymerase III subunit RPC9.
    
 0.978
tbp
TATA-box-binding protein isoform X1.
   
 0.962
LOC106602273
TATA box-binding protein-like protein 2.
   
 0.962
LOC106611245
TATA-box-binding protein 2-like.
   
 0.962
LOC106589653
TATA-box-binding protein-like.
   
 0.962
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.