STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106605696Probable ATP-dependent RNA helicase ddx6; Belongs to the DEAD box helicase family. (490 aa)    
Predicted Functional Partners:
dcp2
m7GpppN-mRNA hydrolase isoform X1.
   
 0.975
LOC106571976
mRNA-decapping enzyme 1A-like isoform X1.
   
 0.974
LOC106561715
Enhancer of mRNA-decapping protein 3-like.
   
 0.947
EDC3
Enhancer of mRNA-decapping protein 3-like.
   
 0.947
LOC106587552
Enhancer of mRNA-decapping protein 3-like.
   
 0.947
tgfi1
Protein PAT1 homolog 2 isoform X1.
   
 0.937
LOC106609972
Protein PAT1 homolog 1-like isoform X1.
   
 0.937
LOC106602767
Protein PAT1 homolog 1-like.
   
 0.937
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
   
 0.936
LOC106585172
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
   
 0.936
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.