STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106613685Calreticulin. (446 aa)    
Predicted Functional Partners:
pdia3
Protein disulfide-isomerase.
   
 0.976
LOC106584651
Protein disulfide-isomerase.
   
 0.975
ENSSSAP00000037606
Protein disulfide-isomerase A3-like.
   
 0.960
LOC106569891
Protein disulfide-isomerase.
   
 0.960
TAPBP
TAP binding protein.
    
 0.955
LOC106569962
Tapasin-like isoform X1.
    
 0.933
grp78
78 kDa glucose-regulated protein precursor; Belongs to the heat shock protein 70 family.
   
 0.901
LOC106569947
Major histocompatibility complex class I-related gene protein-like; Belongs to the MHC class I family.
    
 0.879
LOC106588401
Class I histocompatibility antigen, F10 alpha chain-like; Belongs to the MHC class I family.
    
 0.879
LOC106567149
78 kDa glucose-regulated protein-like; Belongs to the heat shock protein 70 family.
   
 0.860
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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