STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106611380Calpain-1 catalytic subunit-like; Belongs to the peptidase C2 family. (746 aa)    
Predicted Functional Partners:
ical
Calpastatin isoform X3.
   
 0.786
LOC101448033
Calpastatin 2 isoform X5.
   
 0.786
capns1
Calpain small subunit 1.
   
0.663
CAPNS1
Calpain small subunit 1.
   
0.663
ENSSSAP00000046744
Calpain small subunit 1-like.
   
 0.663
LOC106580759
Calpain small subunit 1-like.
   
0.663
ENSSSAP00000104517
annotation not available
   
0.663
LOC106611341
Intersectin-2-like.
   
 
  0.647
ENSSSAP00000067020
Intersectin 2b.
   
 
  0.647
LOC106609604
Leucine-rich repeat and guanylate kinase domain-containing protein-like.
   
 
 0.552
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.