STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106601022Ras-related protein Rab-5C-like. (219 aa)    
Predicted Functional Partners:
RABX5
Rab5 GDP/GTP exchange factor.
   
 0.958
LOC106567664
Rab5 GDP/GTP exchange factor-like.
   
 0.954
rabgef1
Rab5 GDP/GTP exchange factor isoform X2.
   
 0.954
LOC106612901
Rab5 GDP/GTP exchange factor-like.
   
 0.954
LOC106580958
Rab5 GDP/GTP exchange factor-like.
   
 0.954
LOC106573307
Early endosome antigen 1-like isoform X1.
    
 0.931
LOC106561425
Early endosome antigen 1-like isoform X1.
    
 0.931
LOC106608867
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.878
LOC106577844
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.878
appl1
DCC-interacting protein 13-alpha isoform X2.
    
 
 0.870
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.