STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106579491Runt-related transcription factor. (435 aa)    
Predicted Functional Partners:
LOC106560844
Core-binding factor subunit beta-like.
    
 0.923
LOC106573726
Core-binding factor subunit beta isoform X1.
    
 0.923
mysm1
Histone H2A deubiquitinase MYSM1.
    
  0.763
LOC106613979
Histone H2A deubiquitinase MYSM1-like.
    
  0.763
LOC106604953
Histone deacetylase 3.
    
 0.709
hdac3
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.709
lef1
Lymphoid enhancer-binding factor 1 isoform X5.
   
 0.698
TCF7L1
Transcription factor 7-like 1-A.
   
 0.696
gata1
GATA-binding factor 1.
    
 0.694
LOC106613407
Transcriptional coactivator YAP1-like.
    
 0.678
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.