STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106609775Prestin-like. (747 aa)    
Predicted Functional Partners:
ND4
NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity).
  
 
 0.725
rpgrip1l
Protein fantom.
      
 0.600
srrm4
Serine/arginine repetitive matrix protein 4.
      
 0.570
LOC106579824
Serine/arginine repetitive matrix protein 4-like isoform X2.
      
 0.570
lyrm4
LYR motif-containing protein 4A; Belongs to the complex I LYR family.
    
 
 0.566
lyrm4b
LYR motif-containing protein 4B; Belongs to the complex I LYR family.
    
 
 0.566
ENSSSAP00000070983
annotation not available
    
 
 0.566
CLCA1
Epithelial chloride channel protein-like.
   
 
 0.557
CLCA1-2
Epithelial chloride channel protein-like.
   
 
 0.557
MRE11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
  
   0.557
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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