STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106607994Ras-related protein Rab-32-like. (238 aa)    
Predicted Functional Partners:
LOC106602942
Rab proteins geranylgeranyltransferase component A 2-like isoform X1.
    
 0.759
rabggta
Geranylgeranyl transferase type-2 subunit alpha isoform X1.
    
 0.737
gak
cyclin-G-associated kinase isoform X1.
    
 
 0.717
ankrd27
Ankyrin repeat domain-containing protein 27 isoform X2.
    
 
 0.652
LOC106573252
Ankyrin repeat domain-containing protein 27-like isoform X3.
    
 
 0.652
hps1
Hermansky-Pudlak syndrome 1 protein.
     
 0.650
LAMP1
Lysosomal-associated membrane protein 1 precursor.
      
 0.637
vps11
Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family.
      
 0.620
ENSSSAP00000096471
VPS11 core subunit of CORVET and HOPS complexes.
      
 0.620
PTAR1
Protein prenyltransferase alpha subunit repeat-containing protein 1-like isoform X2.
    
 0.613
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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