STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106608676DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1865 aa)    
Predicted Functional Partners:
polr2h
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.997
LOC106604380
Integrator complex subunit 5-like.
    
 0.994
gtf2e1
General transcription factor IIE subunit 1.
    
 0.992
POLR2B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.991
rpb2
Salmo salar DNA-directed RNA polymerase II subunit RPB2 (rpb2), mRNA.
   
 0.991
ercc6
DNA excision repair protein ERCC-6.
    
 0.991
cdk9
Cyclin-dependent kinase 9 isoform X1; Belongs to the protein kinase superfamily.
    
 0.990
LOC106601222
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.988
polr2c
DNA-directed RNA polymerase II subunit RPB3.
    
 0.988
ENSSSAP00000034961
Polymerase (RNA) II (DNA directed) polypeptide C.
    
 0.988
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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