STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106582184Thrombospondin type-1 domain-containing protein 7A-like isoform X1. (1743 aa)    
Predicted Functional Partners:
LOC106586440
GDP-fucose protein O-fucosyltransferase 2-like isoform X1.
     
 0.467
LOC106582296
GDP-fucose protein O-fucosyltransferase 2-like.
     
 0.467
ENSSSAP00000045356
Peptidoglycan recognition protein 5.
      
 0.465
polr2i
DNA-directed RNA polymerase II subunit RPB9 isoform X1.
      
 0.465
LOC106612440
Beta-1,3-glucosyltransferase-like isoform X3.
    
  0.457
B3GLT
Beta-1,3-glucosyltransferase precursor.
    
  0.457
exd3
Exonuclease mut-7 homolog isoform X1.
      
 0.433
spata48
Uncharacterized protein C7orf72 homolog isoform X1.
      
 0.429
LOC106605624
Nephrin-like isoform X3.
      
 0.402
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.