STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106608675Macrophage-capping protein-like isoform X1. (362 aa)    
Predicted Functional Partners:
COG8
Conserved oligomeric Golgi complex subunit 8-like.
    
 
 0.696
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 
 0.668
ENSSSAP00000039990
annotation not available
    
 
 0.564
cog3
Conserved oligomeric Golgi complex subunit 3.
    
 
 0.564
LOC106574738
Peripheral plasma membrane protein CASK-like.
    
  0.537
ENSSSAP00000105696
Calcium/calmodulin-dependent serine protein kinase b.
    
  0.537
cask
Peripheral plasma membrane protein CASK isoform X10; Belongs to the MAGUK family.
    
  0.537
CASK
Peripheral plasma membrane protein CASK-like isoform X11; Belongs to the MAGUK family.
    
  0.537
LOC106562226
LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4-like.
    
 
 0.522
SMIM7
Small integral membrane protein 7 isoform X3.
    
 
 0.522
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.