STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106607427Procollagen galactosyltransferase 1-like. (616 aa)    
Predicted Functional Partners:
PLOD3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
   
0.651
ENSSSAP00000040776
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
   
0.651
plod1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 isoform X1.
   
0.651
LOC106590681
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2-like isoform X2.
   
0.651
ogfod2
2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 isoform X1.
   
 0.535
LOC106564695
Collagen alpha-1(XVII) chain-like isoform X1.
    
 0.499
LOC106586738
Collagen alpha-1(XVII) chain-like isoform X2.
    
 0.499
col17a1
Collagen alpha-1(XVII) chain.
    
 0.499
LOC106591834
Collagen alpha-2(VI) chain-like.
   
 0.456
ENSSSAP00000023692
annotation not available
   
 0.456
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.