mif protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mif

Macrophage migration inhibitory factor. (114 aa)

Predicted Functional Partners:

LOC106573680

0.921

LOC106560893

0.921

got1

0.915

GOT1

0.915

LOC106564367

0.915

hpd

0.915

ENSSSAP00000103261

0.915

LOC106585509

0.915

LOC106587404

0.911

LOC106573756

0.911

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000103261	GOT1	ENSSSAP00000103261	ENSSSAP00000002839	Aspartate aminotransferase, cytoplasmic-like.	Aspartate aminotransferase.	0.605
ENSSSAP00000103261	LOC106560893	ENSSSAP00000103261	ENSSSAP00000040907	Aspartate aminotransferase, cytoplasmic-like.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.908
ENSSSAP00000103261	LOC106564367	ENSSSAP00000103261	ENSSSAP00000018576	Aspartate aminotransferase, cytoplasmic-like.	Aspartate aminotransferase, cytoplasmic-like.	0.608
ENSSSAP00000103261	LOC106573680	ENSSSAP00000103261	ENSSSAP00000015548	Aspartate aminotransferase, cytoplasmic-like.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.908
ENSSSAP00000103261	LOC106573756	ENSSSAP00000103261	ENSSSAP00000073703	Aspartate aminotransferase, cytoplasmic-like.	Aspartate aminotransferase.	0.849
ENSSSAP00000103261	LOC106585509	ENSSSAP00000103261	ENSSSAP00000120984	Aspartate aminotransferase, cytoplasmic-like.	4-hydroxyphenylpyruvate dioxygenase.	0.968
ENSSSAP00000103261	LOC106587404	ENSSSAP00000103261	ENSSSAP00000018745	Aspartate aminotransferase, cytoplasmic-like.	Aspartate aminotransferase.	0.849
ENSSSAP00000103261	got1	ENSSSAP00000103261	ENSSSAP00000001889	Aspartate aminotransferase, cytoplasmic-like.	Aspartate aminotransferase.	0.603
ENSSSAP00000103261	hpd	ENSSSAP00000103261	ENSSSAP00000071006	Aspartate aminotransferase, cytoplasmic-like.	4-hydroxyphenylpyruvate dioxygenase.	0.968
ENSSSAP00000103261	mif	ENSSSAP00000103261	ENSSSAP00000007485	Aspartate aminotransferase, cytoplasmic-like.	Macrophage migration inhibitory factor.	0.915
GOT1	ENSSSAP00000103261	ENSSSAP00000002839	ENSSSAP00000103261	Aspartate aminotransferase.	Aspartate aminotransferase, cytoplasmic-like.	0.605
GOT1	LOC106560893	ENSSSAP00000002839	ENSSSAP00000040907	Aspartate aminotransferase.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.908
GOT1	LOC106564367	ENSSSAP00000002839	ENSSSAP00000018576	Aspartate aminotransferase.	Aspartate aminotransferase, cytoplasmic-like.	0.605
GOT1	LOC106573680	ENSSSAP00000002839	ENSSSAP00000015548	Aspartate aminotransferase.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.908
GOT1	LOC106573756	ENSSSAP00000002839	ENSSSAP00000073703	Aspartate aminotransferase.	Aspartate aminotransferase.	0.847
GOT1	LOC106585509	ENSSSAP00000002839	ENSSSAP00000120984	Aspartate aminotransferase.	4-hydroxyphenylpyruvate dioxygenase.	0.973
GOT1	LOC106587404	ENSSSAP00000002839	ENSSSAP00000018745	Aspartate aminotransferase.	Aspartate aminotransferase.	0.847
GOT1	got1	ENSSSAP00000002839	ENSSSAP00000001889	Aspartate aminotransferase.	Aspartate aminotransferase.	0.604
GOT1	hpd	ENSSSAP00000002839	ENSSSAP00000071006	Aspartate aminotransferase.	4-hydroxyphenylpyruvate dioxygenase.	0.974
GOT1	mif	ENSSSAP00000002839	ENSSSAP00000007485	Aspartate aminotransferase.	Macrophage migration inhibitory factor.	0.915