STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arhgef1Rho guanine nucleotide exchange factor 1 isoform X3. (1063 aa)    
Predicted Functional Partners:
GNA13
Guanine nucleotide-binding protein subunit alpha-13-like.
    
 0.971
LOC106593532
Guanine nucleotide-binding protein subunit alpha-12-like.
    
 0.971
LOC106589443
Guanine nucleotide-binding protein subunit alpha-13-like.
    
 0.971
LOC106572042
Transforming protein RhoA-like isoform X1.
   
 0.966
LOC106566835
Transforming protein RhoA-like.
   
 0.966
LOC106582735
Rho-related GTP-binding protein RhoC.
   
 0.966
LOC106572261
Transforming protein RhoA.
   
 0.966
LOC106565140
Transforming protein RhoA-like.
   
 0.966
LOC106574625
Rho guanine nucleotide exchange factor 7-like isoform X1.
    
 0.937
LOC106611722
Rho guanine nucleotide exchange factor 6-like isoform X1.
    
 0.937
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.