STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106607424LIM homeobox transcription factor 1-alpha-like. (406 aa)    
Predicted Functional Partners:
ENSSSAP00000000724
annotation not available
    
 0.549
ldb1
LIM domain-binding protein 1 isoform X1.
    
 0.549
ENSSSAP00000019265
annotation not available
    
 0.549
LOC106604537
LIM domain-binding protein 2-like isoform X3.
    
 0.549
LOC106611552
LIM domain-binding protein 2.
    
 0.549
ENSSSAP00000067613
LIM domain-binding protein 1.
    
 0.549
ENSSSAP00000069489
annotation not available
    
 0.549
LDB1
LIM domain-binding protein 1-like isoform X3.
    
 0.549
idi1
Isopentenyl-diphosphate Delta-isomerase 1 isoform X1.
    
   0.487
LOC106581161
T-box transcription factor TBX20-like isoform X3.
    
 
 0.434
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.