STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106611888E3 ubiquitin protein ligase. (1023 aa)    
Predicted Functional Partners:
ube2a
Ubiquitin-conjugating enzyme E2 A; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.860
ube2b
Ubiquitin-conjugating enzyme E2 B; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.860
LOC106582136
Ubiquitin-conjugating enzyme E2 A-like; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.860
LOC106586675
Ubiquitin-conjugating enzyme E2 A-like.
    
 0.860
LOC106567528
Ubiquitin-conjugating enzyme E2 B isoform X2; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.860
LOC106611512
Ubiquitin-conjugating enzyme E2 A.
    
 0.860
ENSSSAP00000010613
annotation not available
    
 0.853
LOC106581163
RNA polymerase II-associated factor 1 homolog isoform X2.
    
 0.849
paf1
RNA polymerase II-associated factor 1 homolog.
    
 0.849
cdc73
Parafibromin.
   
 0.845
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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