STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106580283BSD domain-containing protein 1-like. (462 aa)    
Predicted Functional Partners:
ncoa4
Nuclear receptor coactivator 4 isoform X1.
   
    0.605
LOC106576735
Nuclear receptor coactivator 4-like isoform X1.
   
    0.605
LOC106571235
Syndecan-1-like.
      
 0.587
ENSSSAP00000000779
annotation not available
   
    0.560
GHITM
Growth hormone-inducible transmembrane protein-like; Belongs to the BI1 family.
   
    0.560
LOC106613827
Growth hormone-inducible transmembrane protein-like.
   
    0.560
tmem97
Transmembrane protein 97; Intracellular orphan receptor that binds numerous drugs and which is highly expressed in various proliferating cells. Corresponds to the sigma-2 receptor, which is thought to play important role in regulating cell survival, morphology and differentiation. May play a role as a regulator of cellular cholesterol homeostasis. May function as sterol isomerase. May alter the activity of some cytochrome P450 proteins.
      
 0.546
hsdl2
Hydroxysteroid dehydrogenase-like protein 2 isoform X1.
    
 
 0.541
mgdp1
Magnesium-dependent phosphatase 1 isoform X1.
      
 0.511
ENSSSAP00000114839
annotation not available
      
 0.511
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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