STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMD8Sphingomyelin synthase-related protein 1-like. (414 aa)    
Predicted Functional Partners:
ap3m1
AP-3 complex subunit mu-1 isoform X2; Belongs to the adaptor complexes medium subunit family.
      
 0.544
LOC106585102
AP-3 complex subunit mu-2; Belongs to the adaptor complexes medium subunit family.
      
 0.544
smpd2
Sphingomyelin phosphodiesterase 2.
     
 0.524
sptlc1
Serine palmitoyltransferase 1 isoform X1.
      
 0.468
LOC106606739
Sphingolipid delta(4)-desaturase DES1-like.
   
  
 0.441
LOC106576957
Sphingolipid delta(4)-desaturase DES1-like.
   
  
 0.441
LOC106603795
Sphingolipid delta(4)-desaturase/C4-hydroxylase DES2-like.
   
  
 0.441
degs2
Sphingolipid delta(4)-desaturase/C4-hydroxylase DES2.
   
  
 0.441
smpd1
Sphingomyelin phosphodiesterase; Converts sphingomyelin to ceramide.
     
 0.421
smpdl3b
Acid sphingomyelinase-like phosphodiesterase.
     
 0.421
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.