STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106608431RING finger protein 175-like. (173 aa)    
Predicted Functional Partners:
exd3
Exonuclease mut-7 homolog isoform X1.
      
 0.501
LOC106579162
Protein DBF4 homolog B-like isoform X1.
      
 0.501
RNF175
RING finger protein 175-like.
  
     0.485
nsrp1
Nuclear speckle splicing regulatory protein 1 isoform X1.
      
 0.465
LOC106562628
Vacuolar protein sorting-associated protein 33B-like isoform X3; Belongs to the STXBP/unc-18/SEC1 family.
   
    0.424
ENSSSAP00000024195
annotation not available
   
    0.424
LOC106562628-2
Vacuolar protein sorting-associated protein 33B isoform X1; Belongs to the STXBP/unc-18/SEC1 family.
   
    0.424
ENSSSAP00000104229
Vacuolar protein sorting-associated protein 33B-like.
   
    0.424
rnf182
E3 ubiquitin-protein ligase RNF182.
      
 0.402
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.