STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dus1ltRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like isoform X1. (514 aa)    
Predicted Functional Partners:
EPRS1
Bifunctional glutamate/proline--tRNA ligase-like.
  
 
 0.919
LOC106561878
Bifunctional glutamate/proline--tRNA ligase-like isoform X1.
  
 
 0.919
LOC106579246
tRNA (Guanine(10)-N2)-methyltransferase homolog.
   
  
 0.918
LOC106605537
TRNA (guanine(10)-N2)-methyltransferase homolog.
   
  
 0.918
utp3
Something about silencing protein 10 isoform X2.
   
    0.895
nat10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
  
 0.887
rpf1
Ribosome production factor 1.
   
    0.881
noc4l
Nucleolar complex protein 4 homolog.
   
    0.878
wdr36
WD repeat-containing protein 36.
   
   0.878
LOC106568368
WD repeat-containing protein 36-like.
   
   0.878
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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