STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106605740Pyruvate kinase PKM-like. (259 aa)    
Predicted Functional Partners:
rs15
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 0.889
rpl18
60S ribosomal protein L18.
  
 
 0.887
RL23A
60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.850
ENSSSAP00000075673
annotation not available
  
 
 0.850
ENSSSAP00000025392
annotation not available
  
 
 0.824
LOC106570028
60S ribosomal protein L11 isoform X1; Belongs to the universal ribosomal protein uL5 family.
  
 
 0.824
LOC106588488
60S ribosomal protein L11 isoform X2; Belongs to the universal ribosomal protein uL5 family.
  
 
 0.824
rl23
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
  
   0.816
LOC106601262
60S ribosomal protein L23.
  
   0.816
bckdha
2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
  
 
 0.808
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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