STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106611877Homeobox protein CDX-1-like. (247 aa)    
Predicted Functional Partners:
SCD5
Stearoyl-CoA desaturase (Delta-9 desaturase).
      
 0.643
SCD5-2
stearoyl-CoA desaturase 5-like; Belongs to the fatty acid desaturase type 1 family.
      
 0.643
LOC106608494
dnaJ homolog subfamily B member 12-like.
      
 0.550
hnrpdl
Heterogeneous nuclear ribonucleoprotein D-like isoform X1.
    
 
 0.507
LOC106568322
Protein transport protein Sec31A-like isoform X5.
      
 0.491
LOC106562280
Protein transport protein Sec31A-like isoform X2.
      
 0.491
ogg1
N-glycosylase/DNA lyase isoform X1.
      
 0.477
medag
Mesenteric estrogen-dependent adipogenesis protein.
      
 0.467
lef1
Lymphoid enhancer-binding factor 1 isoform X5.
    
 
 0.444
nit2
Omega-amidase NIT2 isoform X1.
      
 0.436
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.