STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tkfcBifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (Cyclizing). (688 aa)    
Predicted Functional Partners:
LOC106569985
Triosephosphate isomerase.
  
 
 0.992
LOC106583351
Triosephosphate isomerase.
  
 
 0.992
LOC106574870
Glycerol-3-phosphate dehydrogenase, mitochondrial-like isoform X2.
    
 0.983
gpd2
Glycerol-3-phosphate dehydrogenase, mitochondrial isoform X1.
    
 0.983
ifih1
Interferon-induced helicase C domain-containing protein 1 isoform X1.
    
 0.983
tpi1b
Salmo salar triosephosphate isomerase 1b (tpi1b), mRNA.
  
 
 0.924
ENSSSAP00000089375
Triosephosphate isomerase 1a.
  
 
 0.924
ENSSSAP00000022907
annotation not available
    
 0.922
dhso
Sorbitol dehydrogenase.
  
 0.922
LOC106562152
Sorbitol dehydrogenase-like isoform X1.
  
 0.922
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.