Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IMMP1LMitochondrial inner membrane protease subunit. (205 aa)    
Predicted Functional Partners:
kptn
Kaptin.
    
 0.935
LOC106573249
Mitochondrial inner membrane protease subunit 2-like isoform X1.
    
0.912
depdc5
DEP domain-containing protein 5 isoform X4.
    
 0.899
LOC106602378
Signal peptidase complex subunit 3.
   
 0.898
spcs3
Signal peptidase complex subunit 3.
   
 0.898
SPCS1
Signal peptidase complex subunit 1.
   
 0.893
SPCS2
Probable Signal peptidase complex subunit 2.
   
 0.884
SPCS2-2
Probable Signal peptidase complex subunit 2.
   
 0.884
SZT2
Protein SZT2-like isoform X6.
    
 0.863
SZT2-2
Protein SZT2-like isoform X5.
    
 0.863
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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