IMMP1L protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

IMMP1L

Mitochondrial inner membrane protease subunit. (205 aa)

Predicted Functional Partners:

kptn

0.974

depdc5

0.958

SZT2

0.923

SZT2-2

0.923

LOC106587724

0.900

LOC106578258

0.892

wdr24

0.892

tusc4

0.888

nprl2

0.888

SPCS1

0.881

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IMMP1L	LOC106578258	ENSSSAP00000008167	ENSSSAP00000044574	Mitochondrial inner membrane protease subunit.	WD repeat-containing protein 24-like isoform X1.	0.892
IMMP1L	LOC106587724	ENSSSAP00000008167	ENSSSAP00000053175	Mitochondrial inner membrane protease subunit.	Mitochondrial inner membrane protease subunit.	0.900
IMMP1L	SPCS1	ENSSSAP00000008167	ENSSSAP00000078802	Mitochondrial inner membrane protease subunit.	Signal peptidase complex subunit 1.	0.881
IMMP1L	SZT2	ENSSSAP00000008167	ENSSSAP00000047738	Mitochondrial inner membrane protease subunit.	Protein SZT2-like isoform X6.	0.923
IMMP1L	SZT2-2	ENSSSAP00000008167	ENSSSAP00000083364	Mitochondrial inner membrane protease subunit.	Protein SZT2-like isoform X5.	0.923
IMMP1L	depdc5	ENSSSAP00000008167	ENSSSAP00000002055	Mitochondrial inner membrane protease subunit.	DEP domain-containing protein 5 isoform X4.	0.958
IMMP1L	kptn	ENSSSAP00000008167	ENSSSAP00000105010	Mitochondrial inner membrane protease subunit.	Kaptin.	0.974
IMMP1L	nprl2	ENSSSAP00000008167	ENSSSAP00000095297	Mitochondrial inner membrane protease subunit.	Nitrogen permease regulator 2-like protein isoform X1.	0.888
IMMP1L	tusc4	ENSSSAP00000008167	ENSSSAP00000030631	Mitochondrial inner membrane protease subunit.	Tumor suppressor candidate 4.	0.888
IMMP1L	wdr24	ENSSSAP00000008167	ENSSSAP00000062488	Mitochondrial inner membrane protease subunit.	WD repeat-containing protein 24.	0.892
LOC106578258	IMMP1L	ENSSSAP00000044574	ENSSSAP00000008167	WD repeat-containing protein 24-like isoform X1.	Mitochondrial inner membrane protease subunit.	0.892
LOC106578258	LOC106587724	ENSSSAP00000044574	ENSSSAP00000053175	WD repeat-containing protein 24-like isoform X1.	Mitochondrial inner membrane protease subunit.	0.892
LOC106578258	SZT2	ENSSSAP00000044574	ENSSSAP00000047738	WD repeat-containing protein 24-like isoform X1.	Protein SZT2-like isoform X6.	0.975
LOC106578258	SZT2-2	ENSSSAP00000044574	ENSSSAP00000083364	WD repeat-containing protein 24-like isoform X1.	Protein SZT2-like isoform X5.	0.975
LOC106578258	depdc5	ENSSSAP00000044574	ENSSSAP00000002055	WD repeat-containing protein 24-like isoform X1.	DEP domain-containing protein 5 isoform X4.	0.998
LOC106578258	kptn	ENSSSAP00000044574	ENSSSAP00000105010	WD repeat-containing protein 24-like isoform X1.	Kaptin.	0.995
LOC106578258	nprl2	ENSSSAP00000044574	ENSSSAP00000095297	WD repeat-containing protein 24-like isoform X1.	Nitrogen permease regulator 2-like protein isoform X1.	0.995
LOC106578258	tusc4	ENSSSAP00000044574	ENSSSAP00000030631	WD repeat-containing protein 24-like isoform X1.	Tumor suppressor candidate 4.	0.995
LOC106578258	wdr24	ENSSSAP00000044574	ENSSSAP00000062488	WD repeat-containing protein 24-like isoform X1.	WD repeat-containing protein 24.	0.900
LOC106587724	IMMP1L	ENSSSAP00000053175	ENSSSAP00000008167	Mitochondrial inner membrane protease subunit.	Mitochondrial inner membrane protease subunit.	0.900