STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem215Transmembrane protein 215. (232 aa)    
Predicted Functional Partners:
casc1
Protein CASC1 isoform X1.
      
 0.723
LOC106578564
Cadherin-18-like; Cadherins are calcium-dependent cell adhesion proteins.
   
  
 0.582
CDH18
Cadherin-18-like; Cadherins are calcium-dependent cell adhesion proteins.
   
  
 0.582
ENSSSAP00000048268
annotation not available
   
  
 0.582
CDH18-2
Cadherin-18-like; Cadherins are calcium-dependent cell adhesion proteins.
   
  
 0.582
CDH18-3
Cadherin-18-like; Cadherins are calcium-dependent cell adhesion proteins.
   
  
 0.582
LOC106605981
Visual system homeobox 1-like isoform X2.
      
 0.574
vsx1
Visual system homeobox 1 isoform X2.
      
 0.574
ENSSSAP00000022196
TBC1 domain family member 15.
      
 0.499
LOC106594572
TBC1 domain family member 15-like.
      
 0.499
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.