LOC106604546 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106604546

Paired mesoderm homeobox protein 2B-like. (286 aa)

Predicted Functional Partners:

ENSSSAP00000080569

0.566

LOC106602386

0.523

LOC106610171

0.523

LOC106609447

0.515

LOC106576278

0.515

th

0.515

drgx

0.434

ENSSSAP00000012992

0.433

LOC106576823

0.433

ENSSSAP00000003710

0.428

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000003710	LOC106604546	ENSSSAP00000003710	ENSSSAP00000008210	Insulinoma-associated 1b.	Paired mesoderm homeobox protein 2B-like.	0.428
ENSSSAP00000012992	ENSSSAP00000080569	ENSSSAP00000012992	ENSSSAP00000080569	Ret proto-oncogene receptor tyrosine kinase.	annotation not available	0.558
ENSSSAP00000012992	LOC106604546	ENSSSAP00000012992	ENSSSAP00000008210	Ret proto-oncogene receptor tyrosine kinase.	Paired mesoderm homeobox protein 2B-like.	0.433
ENSSSAP00000080569	ENSSSAP00000012992	ENSSSAP00000080569	ENSSSAP00000012992	annotation not available	Ret proto-oncogene receptor tyrosine kinase.	0.558
ENSSSAP00000080569	LOC106576823	ENSSSAP00000080569	ENSSSAP00000046991	annotation not available	Proto-oncogene tyrosine-protein kinase receptor Ret; Receptor tyrosine-protein kinase involved in numerous cellular mechanisms including cell proliferation, neuronal navigation, cell migration, and cell differentiation upon binding with glial cell derived neurotrophic factor family ligands.	0.558
ENSSSAP00000080569	LOC106604546	ENSSSAP00000080569	ENSSSAP00000008210	annotation not available	Paired mesoderm homeobox protein 2B-like.	0.566
LOC106576278	LOC106604546	ENSSSAP00000060010	ENSSSAP00000008210	Tyrosine 3-monooxygenase-like.	Paired mesoderm homeobox protein 2B-like.	0.515
LOC106576278	LOC106609447	ENSSSAP00000060010	ENSSSAP00000043099	Tyrosine 3-monooxygenase-like.	Tyrosine 3-monooxygenase-like.	0.900
LOC106576823	ENSSSAP00000080569	ENSSSAP00000046991	ENSSSAP00000080569	Proto-oncogene tyrosine-protein kinase receptor Ret; Receptor tyrosine-protein kinase involved in numerous cellular mechanisms including cell proliferation, neuronal navigation, cell migration, and cell differentiation upon binding with glial cell derived neurotrophic factor family ligands.	annotation not available	0.558
LOC106576823	LOC106604546	ENSSSAP00000046991	ENSSSAP00000008210	Proto-oncogene tyrosine-protein kinase receptor Ret; Receptor tyrosine-protein kinase involved in numerous cellular mechanisms including cell proliferation, neuronal navigation, cell migration, and cell differentiation upon binding with glial cell derived neurotrophic factor family ligands.	Paired mesoderm homeobox protein 2B-like.	0.433
LOC106602386	LOC106604546	ENSSSAP00000057484	ENSSSAP00000008210	Heart- and neural crest derivatives-expressed protein 2-like.	Paired mesoderm homeobox protein 2B-like.	0.523
LOC106604546	ENSSSAP00000003710	ENSSSAP00000008210	ENSSSAP00000003710	Paired mesoderm homeobox protein 2B-like.	Insulinoma-associated 1b.	0.428
LOC106604546	ENSSSAP00000012992	ENSSSAP00000008210	ENSSSAP00000012992	Paired mesoderm homeobox protein 2B-like.	Ret proto-oncogene receptor tyrosine kinase.	0.433
LOC106604546	ENSSSAP00000080569	ENSSSAP00000008210	ENSSSAP00000080569	Paired mesoderm homeobox protein 2B-like.	annotation not available	0.566
LOC106604546	LOC106576278	ENSSSAP00000008210	ENSSSAP00000060010	Paired mesoderm homeobox protein 2B-like.	Tyrosine 3-monooxygenase-like.	0.515
LOC106604546	LOC106576823	ENSSSAP00000008210	ENSSSAP00000046991	Paired mesoderm homeobox protein 2B-like.	Proto-oncogene tyrosine-protein kinase receptor Ret; Receptor tyrosine-protein kinase involved in numerous cellular mechanisms including cell proliferation, neuronal navigation, cell migration, and cell differentiation upon binding with glial cell derived neurotrophic factor family ligands.	0.433
LOC106604546	LOC106602386	ENSSSAP00000008210	ENSSSAP00000057484	Paired mesoderm homeobox protein 2B-like.	Heart- and neural crest derivatives-expressed protein 2-like.	0.523
LOC106604546	LOC106609447	ENSSSAP00000008210	ENSSSAP00000043099	Paired mesoderm homeobox protein 2B-like.	Tyrosine 3-monooxygenase-like.	0.515
LOC106604546	LOC106610171	ENSSSAP00000008210	ENSSSAP00000086427	Paired mesoderm homeobox protein 2B-like.	Scrapie-responsive protein 1-like.	0.523
LOC106604546	drgx	ENSSSAP00000008210	ENSSSAP00000000142	Paired mesoderm homeobox protein 2B-like.	Dorsal root ganglia homeobox protein.	0.434