ENSSSAP00000008213 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSSAP00000008213

GIPC PDZ domain containing family, member 1. (367 aa)

Predicted Functional Partners:

appl1

0.799

APPL2

0.799

LOC106560977

0.799

LOC106582615

0.799

MYO6

0.728

MYO6-2

0.728

LOC106571274

0.728

ENSSSAP00000112373

0.728

NRP1

0.570

NRP1-2

0.570

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APPL2	ENSSSAP00000008213	ENSSSAP00000031002	ENSSSAP00000008213	DCC-interacting protein 13-beta-like.	GIPC PDZ domain containing family, member 1.	0.799
APPL2	LOC106560977	ENSSSAP00000031002	ENSSSAP00000064851	DCC-interacting protein 13-beta-like.	DCC-interacting protein 13-beta-like.	0.999
APPL2	LOC106582615	ENSSSAP00000031002	ENSSSAP00000099218	DCC-interacting protein 13-beta-like.	DCC-interacting protein 13-alpha-like isoform X2.	0.999
APPL2	appl1	ENSSSAP00000031002	ENSSSAP00000014901	DCC-interacting protein 13-beta-like.	DCC-interacting protein 13-alpha isoform X2.	0.999
ENSSSAP00000008213	APPL2	ENSSSAP00000008213	ENSSSAP00000031002	GIPC PDZ domain containing family, member 1.	DCC-interacting protein 13-beta-like.	0.799
ENSSSAP00000008213	ENSSSAP00000112373	ENSSSAP00000008213	ENSSSAP00000112373	GIPC PDZ domain containing family, member 1.	Myosin VIa.	0.728
ENSSSAP00000008213	LOC106560977	ENSSSAP00000008213	ENSSSAP00000064851	GIPC PDZ domain containing family, member 1.	DCC-interacting protein 13-beta-like.	0.799
ENSSSAP00000008213	LOC106571274	ENSSSAP00000008213	ENSSSAP00000092479	GIPC PDZ domain containing family, member 1.	Unconventional myosin-VI-like isoform X3; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.728
ENSSSAP00000008213	LOC106582615	ENSSSAP00000008213	ENSSSAP00000099218	GIPC PDZ domain containing family, member 1.	DCC-interacting protein 13-alpha-like isoform X2.	0.799
ENSSSAP00000008213	MYO6	ENSSSAP00000008213	ENSSSAP00000015541	GIPC PDZ domain containing family, member 1.	Unconventional myosin-VI isoform X6; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.728
ENSSSAP00000008213	MYO6-2	ENSSSAP00000008213	ENSSSAP00000046554	GIPC PDZ domain containing family, member 1.	Unconventional myosin-VI-like isoform X1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.728
ENSSSAP00000008213	NRP1	ENSSSAP00000008213	ENSSSAP00000036828	GIPC PDZ domain containing family, member 1.	Neuropilin-1a-like.	0.570
ENSSSAP00000008213	NRP1-2	ENSSSAP00000008213	ENSSSAP00000036987	GIPC PDZ domain containing family, member 1.	Neuropilin-1a-like.	0.570
ENSSSAP00000008213	appl1	ENSSSAP00000008213	ENSSSAP00000014901	GIPC PDZ domain containing family, member 1.	DCC-interacting protein 13-alpha isoform X2.	0.799
ENSSSAP00000112373	ENSSSAP00000008213	ENSSSAP00000112373	ENSSSAP00000008213	Myosin VIa.	GIPC PDZ domain containing family, member 1.	0.728
LOC106560977	APPL2	ENSSSAP00000064851	ENSSSAP00000031002	DCC-interacting protein 13-beta-like.	DCC-interacting protein 13-beta-like.	0.999
LOC106560977	ENSSSAP00000008213	ENSSSAP00000064851	ENSSSAP00000008213	DCC-interacting protein 13-beta-like.	GIPC PDZ domain containing family, member 1.	0.799
LOC106560977	LOC106582615	ENSSSAP00000064851	ENSSSAP00000099218	DCC-interacting protein 13-beta-like.	DCC-interacting protein 13-alpha-like isoform X2.	0.999
LOC106560977	appl1	ENSSSAP00000064851	ENSSSAP00000014901	DCC-interacting protein 13-beta-like.	DCC-interacting protein 13-alpha isoform X2.	0.999
LOC106571274	ENSSSAP00000008213	ENSSSAP00000092479	ENSSSAP00000008213	Unconventional myosin-VI-like isoform X3; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	GIPC PDZ domain containing family, member 1.	0.728