STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
polr2mGRINL1B. (369 aa)    
Predicted Functional Partners:
polr2c
DNA-directed RNA polymerase II subunit RPB3.
    
 
 0.944
ENSSSAP00000034961
Polymerase (RNA) II (DNA directed) polypeptide C.
    
 
 0.944
POLR2B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.917
rpb2
Salmo salar DNA-directed RNA polymerase II subunit RPB2 (rpb2), mRNA.
    
 
 0.917
RPAB5
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
    
 
 0.901
LOC106562324
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
    
 
 0.901
polr2h
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 
 0.834
gpn1
GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.
    
 
 0.827
LOC106604162
DNA-directed RNA polymerase II subunit RPB7-like.
    
 
 0.827
LOC106612273
DNA-directed RNA polymerase II subunit RPB7.
    
 
 0.827
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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