STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106609625Ras and EF-hand domain-containing protein homolog isoform X1. (835 aa)    
Predicted Functional Partners:
LOC106602942
Rab proteins geranylgeranyltransferase component A 2-like isoform X1.
    
 0.729
LOC106561819
Guanine nucleotide exchange factor for Rab-3A-like isoform X4.
    
 0.715
LOC106584776
Guanine nucleotide exchange factor for Rab-3A-like isoform X1.
    
 0.715
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.696
LOC106609608
Exocyst complex component 4-like isoform X1.
    
 0.663
LOC106565422
Guanine nucleotide exchange factor MSS4-like.
    
 
 0.606
rabggta
Geranylgeranyl transferase type-2 subunit alpha isoform X1.
    
 0.592
EXOC1
Exocyst complex component 1-like isoform X1.
   
 0.591
exoc1
Exocyst complex component 1 isoform X1.
   
 0.591
DYNC1LI1
Dynein cytoplasmic 1 light intermediate chain 1.
    
  0.577
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.