LOC106583660 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106583660

CD276 antigen-like. (289 aa)

Predicted Functional Partners:

LOC106580787

0.510

LOC106573358

0.473

ENSSSAP00000066641

0.473

ENSSSAP00000066827

0.473

ENSSSAP00000068426

0.473

ENSSSAP00000067114

0.470

LOC106577442

0.469

LOC106577474

0.469

LOC106569898

0.434

LOC106561962

0.415

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000066641	LOC106577442	ENSSSAP00000066641	ENSSSAP00000032605	annotation not available	G-protein coupled receptor 4-like; Belongs to the G-protein coupled receptor 1 family.	0.430
ENSSSAP00000066641	LOC106577474	ENSSSAP00000066641	ENSSSAP00000032617	annotation not available	G-protein coupled receptor 4-like; Belongs to the G-protein coupled receptor 1 family.	0.425
ENSSSAP00000066641	LOC106580787	ENSSSAP00000066641	ENSSSAP00000093139	annotation not available	Protein NLRC3-like.	0.448
ENSSSAP00000066641	LOC106583660	ENSSSAP00000066641	ENSSSAP00000008331	annotation not available	CD276 antigen-like.	0.473
ENSSSAP00000066827	LOC106577442	ENSSSAP00000066827	ENSSSAP00000032605	annotation not available	G-protein coupled receptor 4-like; Belongs to the G-protein coupled receptor 1 family.	0.430
ENSSSAP00000066827	LOC106577474	ENSSSAP00000066827	ENSSSAP00000032617	annotation not available	G-protein coupled receptor 4-like; Belongs to the G-protein coupled receptor 1 family.	0.425
ENSSSAP00000066827	LOC106580787	ENSSSAP00000066827	ENSSSAP00000093139	annotation not available	Protein NLRC3-like.	0.448
ENSSSAP00000066827	LOC106583660	ENSSSAP00000066827	ENSSSAP00000008331	annotation not available	CD276 antigen-like.	0.473
ENSSSAP00000067114	LOC106577442	ENSSSAP00000067114	ENSSSAP00000032605	annotation not available	G-protein coupled receptor 4-like; Belongs to the G-protein coupled receptor 1 family.	0.433
ENSSSAP00000067114	LOC106577474	ENSSSAP00000067114	ENSSSAP00000032617	annotation not available	G-protein coupled receptor 4-like; Belongs to the G-protein coupled receptor 1 family.	0.430
ENSSSAP00000067114	LOC106580787	ENSSSAP00000067114	ENSSSAP00000093139	annotation not available	Protein NLRC3-like.	0.448
ENSSSAP00000067114	LOC106583660	ENSSSAP00000067114	ENSSSAP00000008331	annotation not available	CD276 antigen-like.	0.470
ENSSSAP00000068426	LOC106577442	ENSSSAP00000068426	ENSSSAP00000032605	annotation not available	G-protein coupled receptor 4-like; Belongs to the G-protein coupled receptor 1 family.	0.430
ENSSSAP00000068426	LOC106577474	ENSSSAP00000068426	ENSSSAP00000032617	annotation not available	G-protein coupled receptor 4-like; Belongs to the G-protein coupled receptor 1 family.	0.425
ENSSSAP00000068426	LOC106580787	ENSSSAP00000068426	ENSSSAP00000093139	annotation not available	Protein NLRC3-like.	0.448
ENSSSAP00000068426	LOC106583660	ENSSSAP00000068426	ENSSSAP00000008331	annotation not available	CD276 antigen-like.	0.473
LOC106561962	LOC106577442	ENSSSAP00000115067	ENSSSAP00000032605	Synaptotagmin-13-like.	G-protein coupled receptor 4-like; Belongs to the G-protein coupled receptor 1 family.	0.472
LOC106561962	LOC106577474	ENSSSAP00000115067	ENSSSAP00000032617	Synaptotagmin-13-like.	G-protein coupled receptor 4-like; Belongs to the G-protein coupled receptor 1 family.	0.472
LOC106561962	LOC106580787	ENSSSAP00000115067	ENSSSAP00000093139	Synaptotagmin-13-like.	Protein NLRC3-like.	0.445
LOC106561962	LOC106583660	ENSSSAP00000115067	ENSSSAP00000008331	Synaptotagmin-13-like.	CD276 antigen-like.	0.415