STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atg2bAutophagy-related protein 2 homolog B isoform X10. (2073 aa)    
Predicted Functional Partners:
LOC106592102
WD repeat domain phosphoinositide-interacting protein 2.
    
 0.977
wipi1
WD repeat domain phosphoinositide-interacting protein 1 isoform X1.
    
 0.977
LOC106596427
WD repeat domain phosphoinositide-interacting protein 1-like.
    
 0.977
ulk1
Serine/threonine-protein kinase ULK1 isoform X4.
   
 0.922
LOC106579916
Serine/threonine-protein kinase ULK1-like isoform X4.
   
 0.922
ULK2
Serine/threonine-protein kinase ULK2-like isoform X1.
   
 0.922
LOC106612954
Serine/threonine-protein kinase ULK2-like isoform X1.
   
 0.922
LOC106563157
Serine/threonine-protein kinase ULK1-like isoform X1.
   
 0.922
WIPI1
WD repeat domain phosphoinositide-interacting protein 1-like isoform X2.
    
 
 0.782
LOC106569346
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
   
 
 0.680
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.