STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106611934Lysine-specific demethylase 3B-like isoform X2. (1847 aa)    
Predicted Functional Partners:
jmjd6
Histone arginine demethylase JMJD6.
      
 0.467
hspbap1
HSPB1-associated protein 1.
      
 0.465
kdm2a
Lysine-specific demethylase 2A isoform X1.
   
 
 0.419
LOC106579932
Lysine-specific demethylase 2B-like.
   
 
 0.419
kdm2b
Lysine-specific demethylase 2B isoform X5.
   
 
 0.419
LOC106604673
Lysine-specific demethylase 2A-like.
   
 
 0.419
LOC106602582
Lysine-specific demethylase 2A-like isoform X5.
   
 
 0.419
LOC106611679
Lysine-specific demethylase 2A-like isoform X2.
   
 
 0.419
LOC106568226
Lysine-specific demethylase 2B-like isoform X1.
   
 
 0.419
LOC106585505
Lysine-specific demethylase 2B-like isoform X3.
   
 
 0.419
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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