STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106603505Nuclear receptor corepressor 1-like isoform X7. (2479 aa)    
Predicted Functional Partners:
trrap
Transformation/transcription domain-associated protein isoform X8; Belongs to the PI3/PI4-kinase family.
   
 0.962
supt3h
Transcription initiation protein SPT3 homolog.
    
 0.959
LOC100846969
Nuclear Progesterone receptor.
    
 0.956
LOC106604953
Histone deacetylase 3.
    
 0.956
hdac3
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.956
LOC106565817
Transcriptional adapter 3-like.
    
 0.955
LOC106582924
Transcriptional adapter 3.
    
 0.955
LOC106567893
Transcription initiation factor TFIID subunit 9-like isoform X1.
    
 0.954
LOC106603584
Transcription initiation factor TFIID subunit 9-like.
    
 0.954
LOC106604983
Transcription initiation factor TFIID subunit 12-like.
    
 0.953
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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