STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106601683Ankyrin repeat domain-containing protein 40-like. (405 aa)    
Predicted Functional Partners:
sec16a
Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.
   
 0.930
SEC24A
Protein transport protein Sec24A-like isoform X1.
   
 0.902
LOC106604626
Protein transport protein Sec24B-like isoform X1.
   
 0.902
tstd2
Protein transport protein Sec24B-like isoform X1.
   
 0.902
LOC106567533
Protein transport protein Sec24A-like.
   
 0.902
sec13
Protein SEC13 homolog isoform X1; Belongs to the WD repeat SEC13 family.
    
 0.886
ENSSSAP00000055896
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.886
ENSSSAP00000076202
annotation not available
    
 0.886
ENSSSAP00000002268
annotation not available
   
 0.846
sec23b
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.846
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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