ENSSSAP00000008481 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSSAP00000008481

annotation not available (35 aa)

Predicted Functional Partners:

rbm25

0.920

LOC106608217

0.920

LOC106571670

0.920

LOC106611484

0.913

pnisr

0.862

LOC106584003

0.862

ncbp2

0.834

LOC106608594

0.787

LOC106577532

0.787

LOC106563485

0.770

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000008481	LOC106563485	ENSSSAP00000008481	ENSSSAP00000051163	annotation not available	U4/U6.U5 tri-snRNP-associated protein 1-like.	0.770
ENSSSAP00000008481	LOC106571670	ENSSSAP00000008481	ENSSSAP00000082200	annotation not available	RNA-binding protein 25-like isoform X2.	0.920
ENSSSAP00000008481	LOC106577532	ENSSSAP00000008481	ENSSSAP00000117047	annotation not available	Splicing factor 1-like.	0.787
ENSSSAP00000008481	LOC106584003	ENSSSAP00000008481	ENSSSAP00000078294	annotation not available	Arginine/serine-rich protein PNISR-like isoform X3.	0.862
ENSSSAP00000008481	LOC106608217	ENSSSAP00000008481	ENSSSAP00000038814	annotation not available	RNA-binding protein 25-like.	0.920
ENSSSAP00000008481	LOC106608594	ENSSSAP00000008481	ENSSSAP00000004652	annotation not available	Splicing factor 1-like.	0.787
ENSSSAP00000008481	LOC106611484	ENSSSAP00000008481	ENSSSAP00000075345	annotation not available	RNA-binding protein 25-like.	0.913
ENSSSAP00000008481	ncbp2	ENSSSAP00000008481	ENSSSAP00000035933	annotation not available	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.834
ENSSSAP00000008481	pnisr	ENSSSAP00000008481	ENSSSAP00000003888	annotation not available	Arginine/serine-rich protein PNISR isoform X1.	0.862
ENSSSAP00000008481	rbm25	ENSSSAP00000008481	ENSSSAP00000000122	annotation not available	RNA-binding protein 25 isoform X2.	0.920
LOC106563485	ENSSSAP00000008481	ENSSSAP00000051163	ENSSSAP00000008481	U4/U6.U5 tri-snRNP-associated protein 1-like.	annotation not available	0.770
LOC106563485	LOC106571670	ENSSSAP00000051163	ENSSSAP00000082200	U4/U6.U5 tri-snRNP-associated protein 1-like.	RNA-binding protein 25-like isoform X2.	0.951
LOC106563485	LOC106577532	ENSSSAP00000051163	ENSSSAP00000117047	U4/U6.U5 tri-snRNP-associated protein 1-like.	Splicing factor 1-like.	0.526
LOC106563485	LOC106608217	ENSSSAP00000051163	ENSSSAP00000038814	U4/U6.U5 tri-snRNP-associated protein 1-like.	RNA-binding protein 25-like.	0.951
LOC106563485	LOC106608594	ENSSSAP00000051163	ENSSSAP00000004652	U4/U6.U5 tri-snRNP-associated protein 1-like.	Splicing factor 1-like.	0.526
LOC106563485	LOC106611484	ENSSSAP00000051163	ENSSSAP00000075345	U4/U6.U5 tri-snRNP-associated protein 1-like.	RNA-binding protein 25-like.	0.950
LOC106563485	ncbp2	ENSSSAP00000051163	ENSSSAP00000035933	U4/U6.U5 tri-snRNP-associated protein 1-like.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.850
LOC106563485	rbm25	ENSSSAP00000051163	ENSSSAP00000000122	U4/U6.U5 tri-snRNP-associated protein 1-like.	RNA-binding protein 25 isoform X2.	0.951
LOC106571670	ENSSSAP00000008481	ENSSSAP00000082200	ENSSSAP00000008481	RNA-binding protein 25-like isoform X2.	annotation not available	0.920
LOC106571670	LOC106563485	ENSSSAP00000082200	ENSSSAP00000051163	RNA-binding protein 25-like isoform X2.	U4/U6.U5 tri-snRNP-associated protein 1-like.	0.951