STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106606997SEC14-like protein 1 isoform X1. (730 aa)    
Predicted Functional Partners:
LOC106593828
Translocation protein SEC63 homolog isoform X2.
   
 
 0.530
sumf1
Sulfatase-modifying factor 1 precursor.
    
 0.503
SUMF1
LOW QUALITY PROTEIN: sulfatase-modifying factor 1-like.
    
 0.503
LOC106603930
Rabankyrin-5-like isoform X2.
    
 0.477
ankfy1
Rabankyrin-5 isoform X1.
    
 0.477
LOC106574566
Phospholipase.
   
 
 0.470
ENSSSAP00000025511
Phospholipase D2.
   
 
 0.470
LOC106567877
Phospholipase.
   
 
 0.470
ENSSSAP00000102742
annotation not available
   
 
 0.470
ENSSSAP00000102885
annotation not available
   
 
 0.470
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.