PDCD11 protein (Salmo salar) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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[Homology]

Score

PDCD11

Protein RRP5 homolog. (1809 aa)

Predicted Functional Partners:

nop14

0.998

LOC106563613

0.998

utp20

0.998

wdr46

0.998

noc4l

0.997

ddx52

0.997

nol6

0.996

utp3

0.993

heatr1

0.992

ENSSSAP00000052865

0.992

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000052865	LOC106563613	ENSSSAP00000052865	ENSSSAP00000013078	annotation not available	U3 small nucleolar RNA-associated protein 14 homolog A-like.	0.983
ENSSSAP00000052865	PDCD11	ENSSSAP00000052865	ENSSSAP00000008596	annotation not available	Protein RRP5 homolog.	0.992
ENSSSAP00000052865	ddx52	ENSSSAP00000052865	ENSSSAP00000015538	annotation not available	Probable ATP-dependent RNA helicase DDX52 isoform X1.	0.990
ENSSSAP00000052865	noc4l	ENSSSAP00000052865	ENSSSAP00000001038	annotation not available	Nucleolar complex protein 4 homolog.	0.989
ENSSSAP00000052865	nol6	ENSSSAP00000052865	ENSSSAP00000101585	annotation not available	Nucleolar protein 6.	0.996
ENSSSAP00000052865	nop14	ENSSSAP00000052865	ENSSSAP00000006175	annotation not available	Nucleolar protein 14 isoform X1.	0.995
ENSSSAP00000052865	utp20	ENSSSAP00000052865	ENSSSAP00000085817	annotation not available	Small subunit processome component 20 homolog.	0.997
ENSSSAP00000052865	utp3	ENSSSAP00000052865	ENSSSAP00000095558	annotation not available	Something about silencing protein 10 isoform X2.	0.982
ENSSSAP00000052865	wdr46	ENSSSAP00000052865	ENSSSAP00000112369	annotation not available	WD repeat-containing protein 46.	0.993
LOC106563613	ENSSSAP00000052865	ENSSSAP00000013078	ENSSSAP00000052865	U3 small nucleolar RNA-associated protein 14 homolog A-like.	annotation not available	0.983
LOC106563613	PDCD11	ENSSSAP00000013078	ENSSSAP00000008596	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Protein RRP5 homolog.	0.998
LOC106563613	ddx52	ENSSSAP00000013078	ENSSSAP00000015538	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Probable ATP-dependent RNA helicase DDX52 isoform X1.	0.998
LOC106563613	heatr1	ENSSSAP00000013078	ENSSSAP00000027587	U3 small nucleolar RNA-associated protein 14 homolog A-like.	HEAT repeat-containing protein 1.	0.983
LOC106563613	noc4l	ENSSSAP00000013078	ENSSSAP00000001038	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Nucleolar complex protein 4 homolog.	0.999
LOC106563613	nol6	ENSSSAP00000013078	ENSSSAP00000101585	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Nucleolar protein 6.	0.997
LOC106563613	nop14	ENSSSAP00000013078	ENSSSAP00000006175	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Nucleolar protein 14 isoform X1.	0.999
LOC106563613	utp20	ENSSSAP00000013078	ENSSSAP00000085817	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Small subunit processome component 20 homolog.	0.999
LOC106563613	utp3	ENSSSAP00000013078	ENSSSAP00000095558	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Something about silencing protein 10 isoform X2.	0.999
LOC106563613	wdr46	ENSSSAP00000013078	ENSSSAP00000112369	U3 small nucleolar RNA-associated protein 14 homolog A-like.	WD repeat-containing protein 46.	0.999
PDCD11	ENSSSAP00000052865	ENSSSAP00000008596	ENSSSAP00000052865	Protein RRP5 homolog.	annotation not available	0.992