PDCD11 protein (Salmo salar) - STRING interaction network

Nodes:

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

PDCD11

Protein RRP5 homolog. (1809 aa)

Predicted Functional Partners:

noc4l

0.999

nop14

0.999

LOC106563613

0.999

utp20

0.999

nol6

0.999

wdr46

0.999

heatr1

0.998

nat10

0.998

ENSSSAP00000052865

0.998

imp3

0.998

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000052865	LOC106563613	ENSSSAP00000052865	ENSSSAP00000013078	annotation not available	U3 small nucleolar RNA-associated protein 14 homolog A-like.	0.997
ENSSSAP00000052865	PDCD11	ENSSSAP00000052865	ENSSSAP00000008596	annotation not available	Protein RRP5 homolog.	0.998
ENSSSAP00000052865	imp3	ENSSSAP00000052865	ENSSSAP00000090425	annotation not available	U3 small nucleolar ribonucleoprotein protein IMP3.	0.994
ENSSSAP00000052865	nat10	ENSSSAP00000052865	ENSSSAP00000045957	annotation not available	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.998
ENSSSAP00000052865	noc4l	ENSSSAP00000052865	ENSSSAP00000001038	annotation not available	Nucleolar complex protein 4 homolog.	0.997
ENSSSAP00000052865	nol6	ENSSSAP00000052865	ENSSSAP00000101585	annotation not available	Nucleolar protein 6.	0.999
ENSSSAP00000052865	nop14	ENSSSAP00000052865	ENSSSAP00000006175	annotation not available	Nucleolar protein 14 isoform X1.	0.998
ENSSSAP00000052865	utp20	ENSSSAP00000052865	ENSSSAP00000085817	annotation not available	Small subunit processome component 20 homolog.	0.999
ENSSSAP00000052865	wdr46	ENSSSAP00000052865	ENSSSAP00000112369	annotation not available	WD repeat-containing protein 46.	0.999
LOC106563613	ENSSSAP00000052865	ENSSSAP00000013078	ENSSSAP00000052865	U3 small nucleolar RNA-associated protein 14 homolog A-like.	annotation not available	0.997
LOC106563613	PDCD11	ENSSSAP00000013078	ENSSSAP00000008596	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Protein RRP5 homolog.	0.999
LOC106563613	heatr1	ENSSSAP00000013078	ENSSSAP00000027587	U3 small nucleolar RNA-associated protein 14 homolog A-like.	HEAT repeat-containing protein 1.	0.997
LOC106563613	imp3	ENSSSAP00000013078	ENSSSAP00000090425	U3 small nucleolar RNA-associated protein 14 homolog A-like.	U3 small nucleolar ribonucleoprotein protein IMP3.	0.999
LOC106563613	nat10	ENSSSAP00000013078	ENSSSAP00000045957	U3 small nucleolar RNA-associated protein 14 homolog A-like.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.999
LOC106563613	noc4l	ENSSSAP00000013078	ENSSSAP00000001038	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Nucleolar complex protein 4 homolog.	0.999
LOC106563613	nol6	ENSSSAP00000013078	ENSSSAP00000101585	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Nucleolar protein 6.	0.999
LOC106563613	nop14	ENSSSAP00000013078	ENSSSAP00000006175	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Nucleolar protein 14 isoform X1.	0.999
LOC106563613	utp20	ENSSSAP00000013078	ENSSSAP00000085817	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Small subunit processome component 20 homolog.	0.999
LOC106563613	wdr46	ENSSSAP00000013078	ENSSSAP00000112369	U3 small nucleolar RNA-associated protein 14 homolog A-like.	WD repeat-containing protein 46.	0.999
PDCD11	ENSSSAP00000052865	ENSSSAP00000008596	ENSSSAP00000052865	Protein RRP5 homolog.	annotation not available	0.998