STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106605047E3 ubiquitin-protein ligase E3D-like isoform X2. (471 aa)    
Predicted Functional Partners:
LOC106597434
E3 ubiquitin-protein ligase RBBP6-like.
    
 0.957
rbbp6
Retinoblastoma-binding protein 6.
    
 0.957
LOC106593708
E3 ubiquitin-protein ligase RBBP6-like.
    
 0.957
ENSSSAP00000028827
annotation not available
    
 0.957
cpsf3
Cleavage and polyadenylation specificity factor subunit 3.
    
 
 0.940
LOC106608196
Cleavage and polyadenylation specificity factor subunit 2.
    
 
 0.649
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
    
 
 0.649
ube2c
Ubiquitin-conjugating enzyme E2 C isoform X1; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.625
ENSSSAP00000116595
Ubiquitin-conjugating enzyme E2C.
    
 
 0.625
ints9
Integrator complex subunit 9 isoform X2.
    
 
 0.536
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.