LOC106570116 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106570116

26S proteasome non-ATPase regulatory subunit 4-like isoform X1. (399 aa)

Predicted Functional Partners:

PSD8

0.998

psma5

0.998

PSMD2

0.997

LOC100194646

0.996

prs6a

0.996

PSDE

0.996

ENSSSAP00000064527

0.996

psde

0.996

LOC106561966

0.996

LOC106583025

0.995

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000064527	LOC106561966	ENSSSAP00000064527	ENSSSAP00000115245	annotation not available	26S protease regulatory subunit 6A-B-like isoform X1; Belongs to the AAA ATPase family.	0.997
ENSSSAP00000064527	LOC106570116	ENSSSAP00000064527	ENSSSAP00000008768	annotation not available	26S proteasome non-ATPase regulatory subunit 4-like isoform X1.	0.996
ENSSSAP00000064527	LOC106583025	ENSSSAP00000064527	ENSSSAP00000087916	annotation not available	26S proteasome non-ATPase regulatory subunit 6.	0.998
ENSSSAP00000064527	PSD8	ENSSSAP00000064527	ENSSSAP00000064170	annotation not available	26S proteasome non-ATPase regulatory subunit 8.	0.999
ENSSSAP00000064527	PSDE	ENSSSAP00000064527	ENSSSAP00000061082	annotation not available	26S proteasome non-ATPase regulatory subunit 14.	0.998
ENSSSAP00000064527	PSMD2	ENSSSAP00000064527	ENSSSAP00000046534	annotation not available	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.999
ENSSSAP00000064527	prs6a	ENSSSAP00000064527	ENSSSAP00000037472	annotation not available	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	0.997
ENSSSAP00000064527	psde	ENSSSAP00000064527	ENSSSAP00000091798	annotation not available	26S proteasome non-ATPase regulatory subunit 14.	0.998
ENSSSAP00000064527	psma5	ENSSSAP00000064527	ENSSSAP00000109353	annotation not available	Proteasome subunit alpha type.	0.998
LOC100194646	LOC106561966	ENSSSAP00000020135	ENSSSAP00000115245	Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 13.	26S protease regulatory subunit 6A-B-like isoform X1; Belongs to the AAA ATPase family.	0.997
LOC100194646	LOC106570116	ENSSSAP00000020135	ENSSSAP00000008768	Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 13.	26S proteasome non-ATPase regulatory subunit 4-like isoform X1.	0.996
LOC100194646	LOC106583025	ENSSSAP00000020135	ENSSSAP00000087916	Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 13.	26S proteasome non-ATPase regulatory subunit 6.	0.998
LOC100194646	PSD8	ENSSSAP00000020135	ENSSSAP00000064170	Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 13.	26S proteasome non-ATPase regulatory subunit 8.	0.999
LOC100194646	PSDE	ENSSSAP00000020135	ENSSSAP00000061082	Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 13.	26S proteasome non-ATPase regulatory subunit 14.	0.998
LOC100194646	PSMD2	ENSSSAP00000020135	ENSSSAP00000046534	Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 13.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.999
LOC100194646	prs6a	ENSSSAP00000020135	ENSSSAP00000037472	Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 13.	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	0.997
LOC100194646	psde	ENSSSAP00000020135	ENSSSAP00000091798	Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 13.	26S proteasome non-ATPase regulatory subunit 14.	0.998
LOC100194646	psma5	ENSSSAP00000020135	ENSSSAP00000109353	Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 13.	Proteasome subunit alpha type.	0.998
LOC106561966	ENSSSAP00000064527	ENSSSAP00000115245	ENSSSAP00000064527	26S protease regulatory subunit 6A-B-like isoform X1; Belongs to the AAA ATPase family.	annotation not available	0.997
LOC106561966	LOC100194646	ENSSSAP00000115245	ENSSSAP00000020135	26S protease regulatory subunit 6A-B-like isoform X1; Belongs to the AAA ATPase family.	Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 13.	0.997