STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106564430Synaptogyrin. (257 aa)    
Predicted Functional Partners:
NSUN5
NOP2/Sun domain family, member 5; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
      
 0.723
phb
Prohibitin.
   
  
 0.618
LOC106607260
Prohibitin.
   
  
 0.618
PHB2-2
Prohibitin.
   
  
 0.613
PHB2
Prohibitin.
   
  
 0.555
LOC106611341
Intersectin-2-like.
      
 0.465
LOC100286499
Intersectin-1 isoform X5.
      
 0.465
LOC106574310
Intersectin-1-like isoform X8.
      
 0.465
ENSSSAP00000067020
Intersectin 2b.
      
 0.465
LOC106583318
Cell surface glycoprotein 1-like isoform X1.
      
 0.465
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.