STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106563600Transcription factor IIIA-like isoform X1. (355 aa)    
Predicted Functional Partners:
gtf3c1
General transcription factor 3C polypeptide 1.
    
 0.872
LOC106561920
mucin-5AC-like isoform X1.
    
 0.865
LOC106568365
mucin-5AC-like isoform X1.
    
 0.865
gtf3c3
General transcription factor 3C polypeptide 3.
    
 0.835
ENSSSAP00000006529
BRF1 RNA polymerase III transcription initiation factor subunit a.
   
 
 0.803
LOC106610962
Transcription factor IIIB 90 kDa subunit-like.
   
 
 0.803
LOC106571710
Transcription factor IIIB 90 kDa subunit-like.
   
 
 0.803
LOC106601222
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
   
 
 0.764
LOC106607142
DNA-directed RNA polymerases I, II, and III subunit RPABC2-like.
   
 
 0.764
polr2h
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.758
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.